GBBCT77.SEQ Genetic Sequence Data Bank April 15 2018 NCBI-GenBank Flat File Release 225.0 Bacterial Sequences (Part 77) 9 loci, 1978793 bases, from 9 reported sequences LOCUS CP003137 1829111 bp DNA circular BCT 31-JAN-2014 DEFINITION Pediococcus claussenii ATCC BAA-344, complete genome. ACCESSION CP003137 VERSION CP003137.1 DBLINK BioProject: PRJNA42741 BioSample: SAMN02604240 KEYWORDS . SOURCE Pediococcus claussenii ATCC BAA-344 ORGANISM Pediococcus claussenii ATCC BAA-344 Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus. REFERENCE 1 (bases 1 to 1829111) AUTHORS Pittet,V., Abegunde,T., Marfleet,T., Haakensen,M., Morrow,K., Jayaprakash,T., Schroeder,K., Trost,B., Byrns,S., Bergsveinson,J., Kusalik,A. and Ziola,B. TITLE Complete Genome Sequence of the Beer Spoilage Organism Pediococcus claussenii ATCC BAA-344T JOURNAL J. Bacteriol. 194 (5), 1271-1272 (2012) PUBMED 22328764 REFERENCE 2 (bases 1 to 1829111) AUTHORS Pittet,V., Abegunde,T., Marfleet,T., Haakensen,M., Morrow,K., Jayaprakash,T., Schroeder,K., Trost,B., Byrns,S., Bergsveinson,J., Kusalik,A. and Ziola,B. TITLE Direct Submission JOURNAL Submitted (08-DEC-2011) Pathology & Laboratory Medicine, University of Saskatchewan, Room 2841 Royal University Hospital, 103 Hospital Dr, Saskatoon, Saskatchewan S7N 0W8, Canada FEATURES Location/Qualifiers source 1..1829111 /organism="Pediococcus claussenii ATCC BAA-344" /mol_type="genomic DNA" /strain="ATCC BAA-344" /culture_collection="ATCC:BAA-344" /db_xref="taxon:701521" gene complement(113..247) /gene="rpmH" /locus_tag="PECL_1" CDS complement(113..247) /gene="rpmH" /locus_tag="PECL_1" /codon_start=1 /transl_table=11 /product="ribosomal protein L34" /protein_id="AEV94339.1" /translation="MKRTYQPKKRHRQRVHGFRKRMSTSNGRRVLARRRQRGRKVLSA " gene 763..2094 /gene="dnaA" /locus_tag="PECL_2" CDS 763..2094 /gene="dnaA" /locus_tag="PECL_2" /codon_start=1 /transl_table=11 /product="chromosomal replication initiator protein DnaA" /protein_id="AEV94340.1" /translation="MPDYNQLWEQIRSAFENDSSMSKASYNAWVAVASPVSLKNKILT IKVPSSLHKDYWEKHLAEKFIEYAYQFADTDITPAFVIKDPNAPDPDKAQQAAEKKEE DDTQLNSRYTFDTFVTGSGNQMAHAAALAVSEDPGTLYNPLFFYGGVGLGKTHLMHAI GHQILKNNPDTRVKYVTSETFTNDFINSLQKNRQDEFHSKYRNVDLLLVDDVQFFADK EATQEEFFHTFEALYNAEKQIVLTSDRIPNEIPKLQERLVSRFKWGLSVDITPPNLET RIAILREKAIADNVDIPDETLTFIADQVDSNIRELEGAMARIQAYATLQNATITTELA GEALRSLSFGSNLAHVSIALIQSKVADYFHVTVSDLKGKKRVKSIVTPRQIAMYLARD LTDNSLPQIGTEFGGKDHTTVIHAYEKVKDDLENDEDLQRQIGDLKSELKA" gene 2275..3414 /gene="dnaN" /locus_tag="PECL_3" CDS 2275..3414 /gene="dnaN" /locus_tag="PECL_3" /codon_start=1 /transl_table=11 /product="DNA polymerase III, beta subunit" /protein_id="AEV94341.1" /translation="MKFTISRNAFIKKLNAVQRAISSKTTIPILTGLKLVAENDRLIL TGSNTDISIETTIQTTDVDAHLEIVETGSIVLTARFFGEIVKKLPNDTLMLEVSDGFQ TIITSGAAEFTINGLDANSFPRLPEVDSDTTVELDAKVFSELVSETVIAVSNQESRPV LTGIHFTLSGNKLSAVATDSHRLSQRIITLPTEISSNYDIIIPGKSLVELTRMLDDDI ATISMQISENQALFTFDETLFYSRLLEGNYPDTSRLIPTESSTTLEFEAPELLASIER ASLLSHEGRNNVVKLTIDDNAQTVVISGDSPEVGNVEEEVLTKSIAGESLEISFNPDY LKDALRSFGQTTIKVEFTSALRPFTLVPTEDQENFVQLITPVRTF" gene 3740..3964 /gene="yaaA" /locus_tag="PECL_4" CDS 3740..3964 /gene="yaaA" /locus_tag="PECL_4" /codon_start=1 /transl_table=11 /product="S4 domain protein YaaA" /protein_id="AEV94342.1" /translation="MEKIIKINTPFITLGQMLKEEAIIGSGGQAKWFLRENIVLVNSE HDDRRGRKLYPDDVIEVPGEGVFKIAAKNS" gene 3968..5092 /gene="recF" /locus_tag="PECL_5" CDS 3968..5092 /gene="recF" /locus_tag="PECL_5" /codon_start=1 /transl_table=11 /product="DNA replication and repair RecF family protein" /protein_id="AEV94343.1" /translation="MYLETLELHNFRNYDDLNVEFGSGVNVLLGENAQGKTNLLESIY FLAFSRSHRTNNDHDLVNWEGHDARVLGTIRKKHTSVPLEIDITAKGKKAKVNHLEQG KLSQYIGQLNVILFAPEDLSIVKGAPSVRRRFIDMEFGQMSPKYLYNSSQYRSVLKQR NQYLRQLQFKEHPDLVYLDVLTEQLAAFGAEIVFQRIAFLKKLEKWSQVIHNEISQGQ EILRFQYVMPLKENQASSVESIYDGLQNLFKRQRDKEVQQGKTMIGPHLDDVRFIVND KNVSTFGSQGQQRTTALSVKLAEIDLMQEETGEYPVLLLDDVLSELDDSRQTHLLTAI QNKVQTFITTTSLSGVAQQLINEPHVFNINHGDLKETKEE" gene 5096..7039 /gene="gyrB" /locus_tag="PECL_6" CDS 5096..7039 /gene="gyrB" /locus_tag="PECL_6" /codon_start=1 /transl_table=11 /product="DNA gyrase, B subunit" /protein_id="AEV94344.1" /translation="MADEQETKAELAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQG LHHLVWEIIDNGIDEALAGFADRIDVIVEKDNSITVTDNGRGIPVDIQKKTGKPALET VFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELDARVLRNGKIYYIDFALGKVK TPMRIEGDTDPEARGTIVHFVPDPDIFQETTTFDIKVLRTRIRELAFLNKGLRITLKD MRPETPTEDNFHYEGGIKHYVEFLNEGKDVIFPEPIYVEGVTKGITVEVALQYTDGFQ SKLLTFTNNIHTYEGGTHEEGFKRALTRVINDYAKSSGILKDSDDNLSGDDVREGLTA VVSVKHPDPQFEGQTKTKLGNSDARTAVNEVFAETFNKFLLENPSVAHQIVDKGILAS KARIAAKRAREVTRKKSGLELNNLPGKLADNTSKDPKISELFIVEGDSAGGSAKSGRS RLTQAILPIRGKILNVEKATLDRVLANEEIRSLFTALGTGFGEEFDVSKAKYHKLIIM TDADVDGAHIRTLLLTLFYRYMRPMIDAGFVYIAQPPLYQVRQGKMSRYIDSDEELDE VIGQLPPSPKPVIQRYKGLGEMDAEQLWETTMDPENRRLLRVSAEDADSASADFEMLM GDKVEPRRKFIEDNAVYVQNLDI" gene 7083..9578 /gene="gyrA" /locus_tag="PECL_7" CDS 7083..9578 /gene="gyrA" /locus_tag="PECL_7" /codon_start=1 /transl_table=11 /product="DNA gyrase, A subunit" /protein_id="AEV94345.1" /translation="MPEELPSRITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKP VHRRILYGMNELGVTPEKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYM LVDGHGNFGSVDGDGAAAMRYTEARMSKITMEMLRDINKNTVDFQENYDGSEREPVVL PSRFPNLLVNGATGIAVGMTTNIPPHNLSEVISAIHVLMNNSEATVADLMEALPGPDF PTGGIVMGKSGIRKAYETGHGTIILRAKVDIDTEKSGRERIIVTELPYMVNKAKLIER IAELARDKRIEGITDVNDESDREGLRVVVDVRRDTSASVVLNNLYKMTLMQTTFGFNM LAIVNGAPKILSLKEILAYYLEHQEEVVRRRTEFDLKKAEARAHILEGLRIALDHIDE IISIIRSSQTAEVAKDQLMNNYSLSDKQAQAILDMRLVRLTGLERAKVEDEYNKLMVA IEDYRDILAHRERINEIIYNELLEIQSKFGDDRRTELMIGEVLSLEDEDLIEEEDVMV TLTHNGYIKRMATSEFKSQKRGGRGVQGMGVHDDDFIEHLVSTSTHDVLLFFTNAGKV YRMKGYEVPEYSRTAKGIPVINLLGISSDETVQAVINVGRDNGDEDNSKRCLFFTTLK GVVKRTAVSEFLNIRSNGLKAINLKDKDELINVAITTGSENMIIGTHKGYAVSFKEEA VRTMGRSATGVRGIRLRDEDYVVGVDVLRPDSNVLVITEKGYGKQTPASEYPIKGRGG KGIKTANITEKNGPIAGLATVKGDEDIMLITDRGVMIRFNINTVSQTGRt=1oA "PEC TAPSIE RGV HDILYDe9..YdGLrFA757..10047 CDS complemens3968..5092 /gene="re8A" A757..10047 CDS complemens3968..5092 /gene="re8A" 92 /locus_tag="PECL_1" /codon_start=1 /transl_table=11 SrB" gyrase, A subunit"6 /protein_id="AEV9434PKNYEITYIIADFQ AK VERFD="MP YubuVDSGTIVHFVPDPDIFQETTTFDIKVLWYEVRFLPGIGITDMVNYHLNNVKASKLAA F DEGQRHMI RGV HDILYDe9..YdGLrF10097..1061ag="PECL_7" CDS ssb968..5092 /gene="re9A" 10097..1061ag="PECL_7" CDS ssb968..5092 /gene="re9A" 92 /locus_tag="PECL_1" /codon_start=1 /transsingle-_typnded4" -binding1 ssb968..5092 gyrase, A subunit"7 /protein_id="AEV943INRRGI LM GKLPNILKFTL RQRMA AYETGHGTIILRAKVDIDTEKSGREA CVMWR ENFANFVDKGSI IDGRIQTRNYEA QRFEMTbuV FSAAAMRYTEARMSKITMEMLRDINLESRSQSEQRQSDMVGFSQPAPSNNNQ NNNPF QNFTTLTAPSAPSNDPG LRDEDYVVGVDVLRPDSNVLVITGQSIDISKLDLPDALRSFGQTTIKVEFTSALRPFTL10638..1087ag="PECL_4" CDS ensR968..5092 /gene="re10A" 10638..1087ag="PECL_4" CDS ensR968..5092 /gene="re10A" 92 /locus_tag="PECL_1" /codon_start=1 /transl_table=11 S18A" 92 gyrase, A subunit"8 /protein_id="AEV9434FMV ANHIEGAHYK LLKRF SAGGSVGMTTNIPPHNLSEVISAIHVLMR VG KNQ TIAEDE MGLLPDVIGQALRSFGQTTIKVEFTSALRPFTL11068..1307art=1 /gene="re1mH" 11068..1307art=1 /gene="re1mH" /locus_tag="PECL_7" /codon_start=1 /translHH /product="DNA replication and repair RecF family protein" /protein_id="AEV943NFKERIPSFMQNARFSVIVLN IEDLLDELAFY GVVCALSVKLAEIDLMQEETGEYPVLLMFGI LIKGRFS LM DE ETVDGASDLSFRVDR DATIDMP LIYSEQNRALSVKLAEIDLMQEETGEYPVLLEWVNPFLQQFLLLRQVLIIGRLT RGG DHQDDQKSSRVKW NN T ILAYYLEHQEEVVRRRTEFDLKKQRSVYLMDVTRYAE NYAEHPDPQVRISL FDEITQSMS"PEVSN IFVMA ISNGLKAINLKDKDELINVAITTGDWAQEFVNYLMSVQLPHFFIIMVA SLIII FKLLDTIRPSRSKQNFPVTLS INGLKAINLKDKDELINVAITTGAY DLAEVANGIKSN DLALGIRLDQ R RDDTQKTNPMENGDR R RVNDESDREGLRVVVDVRRDTSASISHAVQNLLGQ FATVHLAIDLDSLIASLIIMSVAQDE KQCWIVLDQGGMHSDFKSQKRGGRGVQGMGVHDDDFIEQ VNG DEIKDSIVKK ALEKMTbQEDLINEDHS APDLF RVINGLKAINLKDKDELINVAITTGIIlHHRRPRQISIEPGI VA SYASSTC TEMFEYQSHDGEPIQPIPSRGMLAGITLFYRYMRPMIDAGFVYIAQPPLYDTKKFTERTGTRTF ASYLMS A QIRA RMASYLQRNHLAHSVEFIDNKGIPVINLLGISSDETVQAVINVYAICVE ESVDYDKV A ADSLLRISN VNSF RRS "P I STSEHSVQINGLKAINLKDKDELINVAITTGLLVEMKTGKHLAMAATQIKDVP QAKEQLVQLLTKPEE QNKVQTFITTTSLSGVAQQLI13078..13530g="PECL_4" CDS enlI968..5092 /gene="re1aA" 13078..13530g="PECL_4" CDS enlI968..5092 /gene="re1aA" 92 /locus_tag="PECL_1" /codon_start=1 /transl_table=11 9A" 92 ecF family protein5 /protein_id="AEV943KVIFDYR RGDIQQGKDAVSQNFLIQQGKAKEAMATASVGMTTNIPPHNLSEVISAIHVLSQLKGQQKAEEKH AVLEESQQLKKRDYRDKTVVEIKAK QDGRLFGSIPSK ISALAGFADRIDVIVEKDNSITVTDALEQQFKIKIDKRKIE PIENMIYTNVPVKLHQEVTATIRNGPDEQ QNKVQTFITTTSLSGVAQQLI13554..1495art=1 5096..7039 /gene="gy1aN" 13554..1495art=1 5096..7039 /gene="gy1aN" 39 /locus_tag="PECL_1" /codon_start=1 /translle=11 veS he=11 seA" 92 ecF family protein5 /protein_id="AEV943GMYILHNEIPPQNIPSEKAVLGAIFDSNDALADAMEFVMPDIAVGMTTNIPPHNLSEVISAIHVLYKHLAQSIFSVNEDLNDADEAIQR VN TSH GYR GGVSYERIIVGSVPT ANTHEEGFKRALTRVINDYAKSSGILYYAKIVQSGRS IDTATSIVQ VQ ST PFTLMPEVENRDAK IAVGMTTNIPPHNLSEVISAIHVKPIAIQR TSLLVIF EYQ DETGLPTGFRELFD=TTGLHEGC SVIARPAVTQKALAGFADRIDVIVEKDNSITVTDFVNGSVANVGTKTDDKTGAISLVEM MLCSEFGSD ANLERTQ EEWQKKSGLELNNLPGKLADNTSKDPKLKV MKGSKAKNVEFIDTPGNKMYAERAKC QAKEGNLDEMI DSYL G GKQEANTHEEGFKRALTRVINDYAKSSRQHQESAISRQQLK LTNVPIALLSQSRGVSEQRIDKPVSMSTIRSFGS DSAVATDSHRLSQRIITLPTEISSNVAFLYRDDYYDRDDGNQDDDDDDDPR KNVGPVEVIII NRGKLRRPVNLLFIKKKSGLELNNLPGKLADNTSKDPKYNKFSGSKYMP VN RGV HDILYDe9..YdGLrF50254..6233096..7039 /gene="gyaaA" F50254..6233096..7039 /gene="gyaaA" 039 /locus_tag="PECL_1" /codon_start=1 /tranmajorH /cilit /super /product="DNA replication and repair RecF family protei5" /protein_id="AEV94RELRLKWLEDLA ISTAMSSVWPR TIYMNQELGHGSIAAGDFKSQKRGGRGVQGMGVHDDDFIVLFLNSVAS YVADGRYDKYMASVYLVLGAVFTWLSML LFWNGWPIYPIMLDGAAAMRYTEARMSKITMEMLRDIIGFGTGWIYDIINASL TIQRNQDGYVFNMLYFEMLMGVLVLTALVGKVIKHSVAPLIAVGMTTNIPPHNLSEVISAIHVMEREPIFTIFFPDVLFTYR DEVQlHHVENIKDQ QDFATKQGEVTIPAKNVVIIMKKSGLELNNLPGKLADNTSKDPKLGRFLLIMWVFYQQWNS YA LHIPLSVDSFLWPVNGHFFLVVQMGLSSV AVATDSHRLSQRIITLPTEISSNFKDPYHQVYEFVHFFLVNSFEGQVASAYIHMFGAM IGDEAAFPGSIVVLNILSMPEELPSRITDVNLSNQMRTSFLYDDQGKYQMGTSSFPGALIIGGPL VTATPDVLYREPVTGALVVSIAIIFFIGTIVHFVPDPDIFQETTTFDIKVLNKRRTTKF QNKVQTFITTTSLSGVAQQLI63724..6947ag="PECL_4" CDS /gene="gyecF" I63724..6947ag="PECL_4" CDS /gene="gyecF" CL_4" CDS /locus_tag="PECL_1" /codon_start=1 /trannlpC/P60H /product="DNA replication and repair RecF family protei5" /protein_id="AEV943SIVKEGAYNT KGEIVAVIEDLMTLG ASAMATQGISNGLKAINLKDKDELINVAITTGYNESQQ QPMAYRTGSNNITQSSASADIVQAYL AGMNIPYVWGLSHESGMDCKKSGLELNNLPGKLADNTSKDPKMGTEYVYQEKMGKAVLHNTDIVQGKAVKEQVADAQPGDLGRWGTQGSSHHIAIYIG LRDEDYVVGVDVLRPDSNVLVIKPDVAP